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All meetings wil be in Castetter 107 unless otherwise specified.

Date & Time Speaker Title Links
07/03/2013
11:00 am
Sarah Buddenborg Next Generation Sequencing Slides
Handout
07/17/2013
11:00 am
Lijing Bu
Dan Felker
Unix Tutorial
Contact Lijing Bu prior to the talk to set up an account.
Unix Tutorial
Slides
Practice commands
07/31/2013
11:00 am
Lijing Bu
Dan Felker
Unix Tutorial
Contact Lijing Bu prior to the talk to set up an account.
Unix Tutorial
Practice commands
08/14/2013
11:00 am
Dr. Darrell Dinwiddie TBA

Darrell L. Dinwiddie graduated summa cum laude from the University of New Mexico in 2003 with Bachelor of Science degrees in Biology and Psychology. In 2008, he earned a Ph.D. in Biomedical Sciences from the Department of Pathology at the University of New Mexico School of Medicine. Darrell completed postdoctoral training in virology and immunology at Lovelace Respiratory Research Institute in Albuquerque, New Mexico and in human genetics at the National Center for Genome Resources in Santa Fe, New Mexico. In 2011, he joined Children's Mercy Hospital & Clinics in Kansas City, MO as the Director of Lab Operations for the Center for Pediatric Genomic Medicine. At Children's Mercy, Darrell leads and manages the design, development and deployment of sequence production workflows and quality control systems in support of the Center's operations to develop next-generation sequencing based clinical tests. Dr. Dinwiddie is a member of the American Society of Human Genetics.

08/28/2013
11:00 am
Tori Hansen Illumina sequencing & RNA-Seq
09/11/2013
4:00 pm
Everyone Crowdsourcing your bioinformatics problems
09/25/2013
4:00 pm
Sarah Buddenborg Analyzing 454 transcriptome data. Programs demonstrated will include GMAP/GSNAP, BLAST+/BLASTall, Galaxy, and SeqClean. Please bring a computer if you have one so that you can use these analysis tools on actual 454 transcriptome data. file 1
file 2
10/09/2013
4:00 pm
Connor Cameron An overview of assembly and assembly pipelines for transcriptomes and genomes. This will focus on establishing some background information about assembly, and then will briefly approach applications and issues for these techniques. Additionally, some information about NCGR will probably be included.
10/23/2013
4:00 pm
TBA TBA
11/13/2013
4:00 pm
TBA TBA
12/11/2013
4:00 pm
TBA TBA